CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2249
Accession number EF370275
Name 01KMH11_2740s1
SubtypeB
CountrySouth Korea
Sampling year 2001
PatientKMH

EF370275 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gt

Isolates with identical sequences of region:

EF370222(#1717) EF370226(#2238) EF370273(#1740) EF370274(#1741) EF370311(#1759) EF370370(#2944) EF370372(#1798) EU047670(#1868) EU047671(#2843) EU047672(#1869)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy