CESSHIV-1 database

General information on HIV-1 isolate

# 3045

Accession number	FJ210868
Name	NII_GTB_IND_LTRCSWG5
Subtype	C
Country	India
Sampling year	2008

FJ210868 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

tcaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctaggt agaccagatc tgagcctggg agctctctgg ctatctaggg aaccccctgc ttaagcctca ataaagcttg ccttgagtgc tctgagcagt gt

Isolates with identical sequences of region:

FJ432062(#3052)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy