CESSHIV-1 database

General information on HIV-1 isolate

# 2326

Accession number	FJ614895
Name	01LKD2_4087s1
Subtype	CRF02_AG
Country	South Korea (Ghana)
Sampling year	2001
Patient	LKD

FJ614895 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagcc gcttctcgcc tgtactgggt ctctcttgct agaccagatt tgagcctggg agctctctga ctagcg-gaga acccactgct taagcctcaa taaagcttgc cttgagtgct taaagtagtg t

Isolates with identical sequences of region:

FJ614894(#2325)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy