CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2345
Accession number FJ614928
Name 93MHI10_4802s
SubtypeCRF02_AG
CountrySouth Korea (Africa)
Sampling year 1993
PatientMHI

FJ614928 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gacgctgcat ataagcagct gcttctcgcc tgtactgggt ctctcttgct agaccagatt tgagcctggg agctctctga ctagcagagg aacccactac ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012