CESSHIV-1 database

General information on HIV-1 isolate

# 2459

Accession number	L28891
Name	4A0LTR
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	4

L28891 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagcc gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gt

Isolates with identical sequences of region:

L28883(#2451) L28884(#2452) L28898(#2466) L28911(#2479) L28912(#2480)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy