CESSHIV-1 database

General information on HIV-1 isolate

# 3820

Accession number	M58265
Name	V3_16
Subtype	B
Country	France
Sampling year	1986
Patient	P1

M58265 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc cgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

M58219(#3774) M58222(#3777) M58223(#3778) M58224(#3779) M58225(#3780) M58227(#3782) M58229(#3784) M58230(#3785) M58233(#3788) M58235(#3790) M58254(#3809) M58255(#3810) M58257(#3812) M58258(#3813) M58261(#3816) M58262(#3817) M58263(#3818) M58264(#3819) M58268(#3823) M58271(#3826)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy