CESSHIV-1 database

General information on HIV-1 isolate

# 6

Accession number	M93259
Name	YU-10
Subtype	B
Country	USA
Sampling year	1986
Patient	YU

M93259 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttt-gcct gtactgggtc tctctggtta gaccagatct gagcctggga gctctctggc tagctaggaa acccactgct taagcctcaa taaagcttgc cttgagtgct ttaagtagtg t

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy