CESSHIV-1 database

General information on HIV-1 isolate

# 369

Accession number	U51188
Name	90cf402, CAR_E
Subtype	CRF01_AE
Country	CAR
Sampling year	1990
Patient	(61)

U51188 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat aaaagcagcc gcttttcgct tgtactgggt ctctcttgtt agaccaggtc -gagcccggga gctctctggc tagcagggga acccactgct taaagcctca ataaagcttg ccttgagtgc ttaaagtggt gt

Isolates with identical sequences of region:

AB032740(#120) AB052611(#1067) AB253423(#906)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy