CESSHIV-1 database

General information on HIV-1 isolate

# 2568

Accession number	U81463
Name	VE10NEF
Subtype	B
Country	Venezuela
Sampling year	1995
Patient	10

U81463 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgaaccctca gatgctgcat ataagcagct gctttctgct tgtactgggt ctttctggtt agaccagatc tgagcctggg agctctctgg ctaactagga aacccactgc ttaagcctca ataaagcttg ccttgagtgc tacaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy