CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 975
Accession number AB191655
Name 99ZMG2
SubtypeC
CountryZambia
Sampling year 1999

AB191655 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actagggagt ggtcaaccct cagaagctgc atataagcag ctgcttttcg cttggactgg gtctctctag gtagaccaga tttgagcctg ggagctctct ggctatttag ggaaccccct gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy