CESSHIV-1 database

General information on HIV-1 isolate

# 736

Accession number	AB231895
Name	GHNJ185
Subtype	CRF02_AG
Country	Ghana
Sampling year	2003

AB231895 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagatgctgc atataagcag ccgcttctcg cctgtactgg gtctctctcg ctagaccaga tttgagcctg ggagctctct ggatagcaga ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

AB286859(#949) AB286860(#950)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy