CESSHIV-1 database

General information on HIV-1 isolate

# 1279

Accession number	AF196708
Name	95TH85
Subtype	B
Country	Thailand
Sampling year	1995

AF196708 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggatt gccgagccct cagatgctgc atataagcag ctgctttt-gc ctgtactggg tctctctggt tagaccagat ctgagcctgg gagctctctg gctagctagg gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaagtag tgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy