CESSHIV-1 database

General information on HIV-1 isolate

# 1280

Accession number	AF196709
Name	97TH50
Subtype	B
Country	Thailand
Sampling year	1997

AF196709 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actgggaatt g-cgagccctc agatgcatat aagcagctg-t gccttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctgagctagg gaacccactg cttaagcctc aataaagctt gccttgagtg cttaaagtag tgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy