CESSHIV-1 database

General information on HIV-1 isolate

# 3138

Accession number	AY611004
Name	03SP119304
Subtype	G
Country	Spain (Equatorial Guinea)
Sampling year	2003

AY611004 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagatgctgc atataagcag ccgcttctcg cctgtactgg gtctctcttg ctagaccaga tttgagcctg ggagctctct gactagcagg ggaacccact gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

Isolates with identical sequences of region:

FJ614982(#2398) FJ614987(#2402) FJ614988(#2403)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy