CESSHIV-1 database

General information on HIV-1 isolate

# 3636

Accession number	DQ848470
Name	me4
Subtype	B
Country	USA
Sampling year	1990
Patient	E-mother

DQ848470 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggg-agtg gcgagccctc agatgctgca tataagcagc tgctttttgc ctgtactggg tctctctggt tagaccagat ctgagcctgg gagctctctg gctaactagg gagcccactg cttaagcctc aataaagctt gccttgagtg cttcaagtag tgt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy