CESSHIV-1 database

General information on HIV-1 isolate

# 1796

Accession number	EF370369
Name	03Lsw3_2239
Subtype	B
Country	South Korea
Sampling year	2003
Patient	Lsw

EF370369 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc ataaaagcag ctgctttttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

Isolates with identical sequences of region:

EF370183(#1456) EF370206(#1711) EF370207(#3152) EF370233(#1722) EF370237(#3012) EF370242(#1719) EF370285(#2253) EF370305(#1753) EF370360(#1779) EU047626(#1828) EU047627(#1829) EU047628(#1830) EU047629(#1831) EU047630(#1832) EU047633(#2942) EU047645(#1843)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy