CESSHIV-1 database

General information on HIV-1 isolate

# 3736

Accession number	M58177
Name	L1_05
Subtype	B
Country	France
Sampling year	1985
Patient	P1

M58177 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgcnttttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

M58188(#3745) M58189(#3746) M58213(#3768) M58239(#3794)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy