CESSHIV-1 database

General information on HIV-1 isolate

# 727

Accession number	AB220944
Name	93TH051
Subtype	CRF01_AE
Country	Thailand
Sampling year	1993

AB220944 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tctcgcttgt actgggtctc tcttgttaga ccaggtc-gag cccgggagct ctctggctag caagggaacc cactgcttaa agcctcaata aagcttgcct tgagtgctta aagtggtgt

Isolates with identical sequences of region:

EF036529(#851) EF036530(#852) U51296(#2515)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy