CESSHIV-1 database

General information on HIV-1 isolate

# 933

Accession number	AB287367
Name	p05JPDR7060B68
Subtype	B
Country	Japan
Sampling year	2005
Patient	NH0020

AB287367 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct ttt-gcctgta ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgt

Isolates with identical sequences of region:

AB287366(#932) EF370353(#3014) EU047682(#1878) EU047683(#1879)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy