CESSHIV-1 database

General information on HIV-1 isolate

# 1920

Accession number	AF096639
Name	TZB0064
Subtype	ACD
Country	Tanzania
Sampling year	1996
Patient	64

AF096639 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctaggtaga ccagatctga gcctgggagc tctctggcta tctagggaac ccactgctta agcctcaata aagcttgcct tgagtgctct aagtagtgt

Isolates with identical sequences of region:

AB485647(#2727) AY047300(#3156) AY932717(#2187)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy