CESSHIV-1 database

General information on HIV-1 isolate

# 1952

Accession number	AF239630
Name	PAIR5_MOTHER
Subtype	A
Country	Tanzania
Sampling year	1996
Patient	5-mother

AF239630 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttgcgcctgt actgggtctc tcttgttaga ccagatc-gag cctgggagct ctctgactag caagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgt

Isolates with identical sequences of region:

AF239649(#1971)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy