CESSHIV-1 database

General information on HIV-1 isolate

# 1478

Accession number	AF254689
Name	NT18_1
Subtype	D
Country	Tanzania
Sampling year	1996
Patient	18

AF254689 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tcttgttaga ccagatttga gcctgagagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AF096643(#1925) AF239657(#1979) AF254730(#1517)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy