CESSHIV-1 database

General information on HIV-1 isolate

# 538

Accession number	AJ866557
Name	01IC-PCI123
Subtype	02GK
Country	Cote d'Ivoire
Sampling year	2001
Patient	PCI123

AJ866557 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tctcgcctgt actgggtctc tcttgctaga ccagatttga gcctgggagc tctctgacta gcagaggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AB485636(#2739) AB485637(#2740)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy