CESSHIV-1 database

General information on HIV-1 isolate

# 1994

Accession number	AY610960
Name	03SP135142
Subtype	BC
Country	Spain (Equatorial Guinea)
Sampling year	2003
Patient	135142

AY610960 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctgggtaga ccagatctga gcctgggagc tctctggcta tctagggaac ccactgctta agcctcaata aagcttgcct tgagtgctct aagtagtgt

Isolates with identical sequences of region:

AB191659(#1023) AB485645(#2725) AB485646(#2726) AF239633(#1955) AF239650(#1972) AF254687(#1476) AF254716(#1504) AY610985(#3142) AY921353(#2113) AY932662(#2132) AY932699(#2169) AY932726(#2034)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy