CESSHIV-1 database

General information on HIV-1 isolate

# 2043

Accession number	AY610983
Name	03SP106196
Subtype	G
Country	Spain (Nigeria)
Sampling year	2003

AY610983 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tctcgcctgt actgggtctc tcttgctaga ccagatttga gcctgggagc tctctgacta gcaggggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

FJ614945(#2362) FJ614964(#2386)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy