CESSHIV-1 database

General information on HIV-1 isolate

# 2995

Accession number	DQ848355
Name	mb5
Subtype	B
Country	USA
Sampling year	1990
Patient	B-mother

DQ848355 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagg-aacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgt

Isolates with identical sequences of region:

DQ848354(#2971) DQ848356(#2996) DQ848357(#2997) DQ848358(#2825) DQ848361(#3006)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy