CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3597
Accession number DQ848430
Name md6
SubtypeB
CountryUSA
Sampling year 1990
PatientD-mother

DQ848430 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt tctgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actggggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

DQ848425(#3592) DQ848432(#3599) DQ848435(#2827) DQ848436(#3602) DQ848439(#3605) DQ848440(#3606) DQ848452(#3618)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy