CESSHIV-1 database

General information on HIV-1 isolate

# 3668

Accession number	DQ848502
Name	mg11
Subtype	B
Country	USA
Sampling year	1990
Patient	G-mother

DQ848502 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ctttgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

DQ848492(#3658) DQ848493(#3659) DQ848494(#3660) DQ848496(#3662) DQ848497(#3663) DQ848498(#3664) DQ848500(#3666) DQ848501(#3667) DQ848503(#3669)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy