CESSHIV-1 database

General information on HIV-1 isolate

# 3708

Accession number	DQ848542
Name	i1h9
Subtype	B
Country	USA
Sampling year	1990
Patient	H1-child

DQ848542 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctagttaga ccagatctga gcctgggagc tctctggctg gctagggaac ccactgctta agcctcagta aagcttgcct tgagtgcttc aagtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy