CESSHIV-1 database

General information on HIV-1 isolate

# 2222

Accession number	EF178611
Name	K284 (K285)
Subtype	C
Country	India
Submitted to NCBI	2006

EF178611 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctt tctaggtaga ccagatctga gcccgggagc tctctggcta tctagggagc ccactgctta agcctcaata aagcttgcct tgagtgctct aagtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy