CESSHIV-1 database

General information on HIV-1 isolate

# 2260

Accession number	EF370334
Name	05HPS5b_2717s
Subtype	B
Country	South Korea
Sampling year	2005
Patient	HPS

EF370334 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

EF370326(#1770) EF370348(#2261) EU047681(#1877)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy