CESSHIV-1 database

General information on HIV-1 isolate

# 3043

Accession number	FJ210866
Name	NII_GTB_IND_LTRCSWG3
Subtype	C
Country	India
Sampling year	2008

FJ210866 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctaggtaga ccagatctga gcctgggagc tctctggcta tctagggaac ccactgctta agcctcaata aagcttgcct tgagtgctct gagcagtgt

Isolates with identical sequences of region:

EU574917(#3024) EU835827(#2954) EU835832(#2958) EU835843(#3032) FJ210864(#3000) FJ210867(#3044) FJ432056(#2966) FJ432057(#3047) FJ432061(#3051) FJ432063(#3053) FJ432064(#2967)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy