CESSHIV-1 database

General information on HIV-1 isolate

# 3055

Accession number	FJ432067
Name	NII_PGI_IND_VTE4
Subtype	B
Country	India
Sampling year	2008

FJ432067 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgctca aagtagtga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy