CESSHIV-1 database

General information on HIV-1 isolate

# 2371

Accession number	FJ614952
Name	05MHI10_4086
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2005
Patient	MHI

FJ614952 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tctcgcctgt actgggtctc tcttgctaga ccagatttga gcctgggagc tctctgacta gcagaggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AF196761(#1324) AY611000(#2060) FJ614926(#2343) FJ614927(#2344) FJ614931(#2348) FJ614932(#2349) FJ614934(#2351) FJ614939(#2356) FJ614940(#2357) FJ614942(#2359) FJ614943(#2360) FJ614946(#2363) FJ614949(#2366) FJ614951(#2370) FJ614953(#2372) FJ614954(#2373) FJ614959(#2382) FJ614971(#2391)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy