CESSHIV-1 database

General information on HIV-1 isolate

# 3173

Accession number	FJ670519
Name	X1608-8
Subtype	A1
Country	Spain (Tanzania)
Sampling year	2005
Patient	X1608

FJ670519 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc at---ttttgact agcggaggct agaaggagag a

Isolates with identical sequences of region:

AB052610(#1066) AF361873(#1406) EU110085(#1030) EU448295(#1044)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy