CESSHIV-1 database

General information on HIV-1 isolate

# 1334

Accession number	AY452654
Name	PHD74E2
Subtype	C
Country	Ethiopia
Sampling year	1997
Patient	74

AY452654 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatcagag cctgggagct ctctggctat ctggggcacc -actgcttaag cctcaataaa gcttgccttg agtgctctaa gtagtgtgtg cccgtctgtt gtgtgactct ggtaa

Isolates with identical sequences of region:

AY452653(#1333) AY452655(#1335)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy