CESSHIV-1 database

General information on HIV-1 isolate

# 1334

Accession number	AY452654
Name	PHD74E2
Subtype	C
Country	Ethiopia
Sampling year	1997
Patient	74

AY452654 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcttgt actgggtctc tctaggtaga ccagatcaga gcctgggagc tctctggcta tctggggcac c-actgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgt

Isolates with identical sequences of region:

AY452655(#1335)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy